San Juan (Puerto Rico) weather in September

September in San Juan: sweltering, rainy, with clean air — a gamble, with 38°C afternoons.

Updated September 2026 · climate normals from ERA5 reanalysis

San Juan🇵🇷 Puerto Rico · Greater Antilles · City61
  1. 77Jan
  2. 75Feb
  3. 77Mar
  4. 72Apr
  5. 70May
  6. 70Jun
  7. 66Jul
  8. 64Aug
  9. 61Sep
  10. 63Oct
  11. 64Nov
  12. 73Dec

#12 of 12 months in San Juan · #1120 of 1413 destinations to visit in September · comfort 61/100 (tier C)

Days
32°C
Nights
26°C
Wet days
13
Sun
10.5 h
Humidity
83%
Daylight
12 h
San Juan, Puerto Rico
Photo: Diego F. Parra · Pexels

Traveller notes on San Juan in September

Notes from nearby Charlotte Amalie (125 km away)

San Juan doesn't have its own notes for September yet — these are about Charlotte Amalie, close enough to share the season.

Forum posters describe September as feeling a bit hotter than other months mainly because the trade winds die down, though air and water temperatures otherwise stay fairly consistent year-round - ocean water in September is described as about as warm as it gets, a real plus for anyone prioritizing swimming. Posters characterize rain here as showers here and there rather than a genuine concern, with a full day of rain called rare even during this wetter stretch. September sits at the height of hurricane season, and while posters note no major direct hit since 1995, travel insurance is still commonly recommended given the real (if historically low) risk. The clear upside of visiting during this quieter month: fewer cruise ships, lighter crowds and easier movement around Charlotte Amalie generally.
Tripadvisor community · September · 1 month ago · about Charlotte Amalie · Read more on Tripadvisor ↗

Other months in San Juan

Regulars are specific this technically counts as the wettest month of the year here, edging out August, though outside of hurricane season a shower typically clears within minutes rather than settling in for the day. Our row backs that hot, genuinely showery read, 31.4C reading as a hot 36C, over 24.3C nights, with 82.7mm of rain across 5.6 days and humidity at 78 percent. Regulars are consistent the dying trade-wind breezes this time of year can make the heat feel a touch more intense than earlier spring months despite similar temperatures. This remains a genuinely good month overall, brief widely scattered showers rather than an all-day soak the standard experience. The sea sits at a warm, swimmable 28.3C. The record: 11.5 hours of sun, an 18.9 kph wind and one of the cleanest air readings in this project, AQI 30.
MostRainOfAnyMonthButShowersStayBrief · May · 1 month ago · Read more on Tripadvisor ↗
April is the drier end of the year here and the board frames it as the good window - out of the rainy season, humidity down, temperatures from the low seventies to the mid eighties, which is our 30.1C over 23.3C. They put the sea around 79F and our column says 26.7C, near enough the same water. The qualification our row adds is the standard one for a Caribbean dry season: 98.5mm still falls, across 6.7 days, so the showers are quick and real rather than absent. Nor is it off season - a hard winter in the States fills the island in April. The wind runs 19.1 kph off the Atlantic. The record: humidity 77 percent, 11.3 hours of sun and AQI 33.
TheDriestSeasonStillRains · April · 1 month ago · Read more on Tripadvisor ↗
December opens the dry season without being dry: regulars put it at about four and a half inches and warn that the month can still be wet, adding that a wet day here is not a wet day at home. Our row says 79.8mm across 11.9 days, seven millimetres apiece, under 29.6C over 23.3C. The payoff they name is specific - less rain means less runoff, so the bioluminescent bays are clearer and the glow stronger. The cost is the calendar: the festive season from about mid-December to early January is the island's high season, and air fares, hotels and car hire all climb with it. The record: humidity 82 percent, 10.1 hours of sun, a 18.8 kph wind and a 27.7C sea.
TheBaysGlowBrighterWhenItIsDry · December · 1 month ago · Read more on Tripadvisor ↗
February in San Juan is mid-80s Fahrenheit, a touch cooler than the rest of the year, and the whole forum conversation is about how to read the rain figure. Our row counts 9.5 precipitation days carrying 76.3mm, and regulars explain what that looks like on the ground: fast-moving, widely scattered showers that last minutes rather than hours, often falling in one spot while the sun is out a quarter of a mile away. Their standing complaint is that the forecast sites predict rain every day of the year here, so you would never book if you believed them - one visitor got two or three hours of rain across a whole February week. The record: 29.3C days that feel like 31C, 22.3C nights, 10.7 hours of sun and a 26.1C sea.
SunAQuarterMileAway · February · 1 month ago · Read more on Tripadvisor ↗

Add your own note from San Juan's card on the map.

San Juan climate normals — September

Daytime high32°C / 90°F🔥 sweltering
Nighttime low26°C / 79°F
Feels like (high)38°C / 100°F
Sea temperature30°C / 86°F♨️ bath-warm
Rainfall147 mm / 5.8 in🌧 rainy
Rainy days13 days
Humidity83%💦 very humid
Dew point24°C / 75°F
Sunshine10.5 h/day
Daylight12.2 h
Wind17 km/h / 11 mph
Air quality (US AQI)29🍃 good

Monthly averages from ERA5 reanalysis. AQI is the mean US Air Quality Index for the month.

Crowds in San Juan in September

How busy the place itself is — school and mass holidays, the months an editor tagged, and how sought-after the weather makes them. Never part of the comfort score.

Quietschool holidays in 2 of the markets that fill it, one of its worst months for weather(estimated)

JFMAMJJASOND

Peak crowdsBusyShoulder seasonQuiet

Best months for San Juan's weather

Ranked by this destination's own climate comfort score across the year — a different thing from how busy it gets (see Crowds above).

Fair weatherSan Juan's weather doesn't swing hard through the year — comfort stays fairly steady in every month.

JFMAMJJASOND

What's on in San Juan in September

Recurring seasonal events, natural spectacles, closures and holidays — curated and sourced.

  • Rule

    El Yunque timed reservation

    1 Jan – 31 DecBook earlyClosures

    The main road into the rainforest, the one with the waterfalls and the tower, needs a timed entry reservation booked ahead. Cars without one are turned round at the gate on busy mornings. Source ↗

  • Nature

    Bioluminescent bay nights

    1 Jan – 31 DecBioluminescenceBook early

    Laguna Grande at Fajardo glows all year, but only on the dark nights: operators sell by moon phase, and a full moon washes it out entirely. Rain in the week before also thins it.

  • Hazard

    Hurricane season

    1 Jun – 30 Nov

    Maria came ashore in September 2017 and the island still plans around that month. The statistical peak is the first fortnight of September; June and November rarely deliver anything, and rates in those weeks show it. Source ↗

What's on around the world in September →

Nearby, and something's on

Within 300 km of San Juan — a day trip or a short hop — with something on this month. Never part of the comfort score.

Where is San Juan?

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San Juan in September — FAQ

Is September a good time to visit San Juan?
September in San Juan: sweltering, rainy, with clean air — a gamble, with 38°C afternoons. It ranks #12 of 12 months for San Juan on SeasonMap's comfort score (61/100).
What is the weather like in San Juan in September?
In September, San Juan averages a daily high of 32.4°C and a low of 25.9°C, with about 146.8 mm of rain over roughly 13.3 rainy days.
What is the air quality in San Juan in September?
San Juan has a mean US Air Quality Index of about 29 in September.

Within 300 km: Punta Cana's Turtle nesting on the east coast around 15 Mar – 15 Nov.